Skip to main content

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.

Jiji Chen

Jiji Chen
Jiji Chen ,
Ph.D.
Staff Scientist
Biography

Dr. Chen received his PhD in 2011 from Purdue University under Joseph Irudayaraj. His doctoral work utilized single molecule spectroscopy and time resolved techniques to study epigenetic modifications in single cells. He then joined the Transcription Imaging Consortium at the HHMI Janelia Research Campus to do his post-doctoral fellowship with Maxime Dahan and Robert Tjian. At Janelia, Dr. Chen co-developed the multifocus microscope – a widefield fluorescence microscope capable of imaging multiple focal planes simultaneously. He then combined multifocus microscopy with single molecule imaging to quantitatively track the interactions of transcription factors at endogenous binding elements in 3D in live cells.

Dr. Chen joined the NIH in 2016 as the Co-Operating Director of the Advanced Imaging and Microscopy Resource.

Publications
Ni MLin ZChen ZXu ZZhang QZhao JLi WTang YCao ZLi BYao DCheng CHu YLiu XChen JLiu Z
Ecotoxicol Environ Saf
2024 Dec 10

Updegrove TBDelerue TAnantharaman VCho HChan CNipper TChoo-Wosoba HJenkins LMZhang LSu YShroff HChen JBewley CAAravind LRamamurthi KS
Sci Adv
2024 Oct 18

Wang ZMa WYang ZKiesewetter DOWu YLang LZhang GNakuchima SChen JSu YHan SWu LGJin AJHuang W
J Am Chem Soc
2024 Oct 23

Rehman AZhovmer ASato RMukouyama YSChen JRissone APuertollano RLiu JVishwasrao HDShroff HCombs CAXue H
Sci Rep
2024 Aug 06

Nguyen AZhao HMyagmarsuren DSrinivasan SWu DChen JPiszczek GSchuck P
Elife
2024 Jun 28

Rehman AZhovmer ASato RMukoyama YChen JRissone APuertollano RVishwasrao HShroff HCombs CAXue H
ArXiv
2024 Apr 06

Updegrove TBDelerue TAnantharaman VCho HChan CNipper TChoo-Wosoba HJenkins LMZhang LSu YShroff HChen JBewley CAAravind LRamamurthi KS
bioRxiv
2024 Mar 27

Chandler TGuo MSu YChen JWu YLiu JAgashe AFischer RSMehta SBKumar ABaskin TIJamouillé VLiu HSwaminathan VNain AOldenbourg RRiviére PShroff H
bioRxiv
2024 Mar 12

Chareyre SLi XAnjuwon-Foster BRUpdegrove TBClifford SBrogan APSu YZhang LChen JShroff HRamamurthi KS
Proc Natl Acad Sci U S A
2024 Mar 26

Nguyen AZhao HMyagmarsuren DSrinivasan SWu DChen JPiszczek GSchuck P
bioRxiv
2024 Mar 22



Sun YBaechler SAZhang XKumar SFactor VMArakawa YChau CHOkamoto KParikh AWalker BSu YPChen JTing THuang SNBeck EItkin ZMcKnight CXie CRoper NNijhawan DFigg WDMeltzer PSYang JCThomas CJPommier Y
Nat Commun
2023 Jun 23

Scheich SChen JLiu JSchnütgen FEnssle JCCeribelli MThomas CJChoi JMorris VHsiao TNguyen HWang BBolomsky APhelan JDCorcoran SUrlaub HYoung RMHäupl BWright GWHuang DWJi YYu XXu WYang YZhao HMuppidi JPan KTOellerich TStaudt LM
Cancer Discov
2023 Aug 04

Zhao HWu DHassan SANguyen AChen JPiszczek GSchuck P
Sci Adv
2023 Apr 05

Li XWu YSu YRey-Suarez IMatthaeus CUpdegrove TBWei ZZhang LSasaki HLi YGuo MGiannini JPVishwasrao HDChen JLee SJShao LLiu HRamamurthi KSTaraska JWUpadhyaya ALa Riviere PShroff H
Nat Biotechnol
2023 Sep

Li YSu YGuo MHan XLiu JVishwasrao HDLi XChristensen RSengupta TMoyle MWRey-Suarez IChen JUpadhyaya AUsdin TBColón-Ramos DALiu HWu YShroff H
Nat Methods
2022 Nov

Zhao HNguyen AWu DLi YHassan SAChen JShroff HPiszczek GSchuck P
PNAS Nexus
2022 May


Tabler COWegman SJChen JShroff HAlhusaini NTilton JC
J Virol
2022 May 11

Zhao HNguyen AWu DLi YHassan SAChen JShroff HPiszczek GSchuck P
bioRxiv
2022 Feb 09

Wu YHan XSu YGlidewell MDaniels JSLiu JSengupta TRey-Suarez IFischer RPatel ACombs CSun JWu XChristensen RSmith CBao LSun YDuncan LHChen JPommier YShi YBMurphy ERoy SUpadhyaya AColón-Ramos DLa Riviere PShroff H
Nature
2021 Dec

Sun YChen JHuang SNSu YPWang WAgama KSaha SJenkins LMPascal JMPommier Y
Nat Commun
2021 Aug 18

Chen JSasaki HLai HSu YLiu JWu YZhovmer ACombs CARey-Suarez IChang HYHuang CCLi XGuo MNizambad SUpadhyaya ALee SJLucas LAGShroff H
Nat Methods
2021 Jun

Miyoshi TZhang QMiyake TWatanabe SOhnishi HChen JVishwasrao HDChakraborty OBelyantseva IAPerrin BJShroff HFriedman TBOmori KWatanabe N
Cell Rep
2021 Feb 02



Guo MLi YSu YLambert TNogare DDMoyle MWDuncan LHIkegami RSantella ARey-Suarez IGreen DBeiriger AChen JVishwasrao HGanesan SPrince VWaters JCAnnunziata CMHafner MMohler WAChitnis ABUpadhyaya AUsdin TBBao ZColón-Ramos DLa Riviere PLiu HWu YShroff H
Nat Biotechnol
2020 Nov

Chen JLiu YWu BNikolaitchik OAMohan PRChen JPathak VKHu WS
Proc Natl Acad Sci U S A
2020 Mar 17

Gryder BEPomella SSayers CWu XSSong YChiarella AMBagchi SChou HCSinniah RSWalton AWen XRota RHathaway NAZhao KChen JVakoc CRShern JFStanton BZKhan J
Nat Genet
2019 Dec

Peluso EAUpdegrove TBChen JShroff HRamamurthi KS
Proc Natl Acad Sci U S A
2019 Oct 22

Liu YGong CSDai YYang ZYu GLiu YZhang MLin LTang WZhou ZZhu GChen JJacobson OKiesewetter DOWang ZChen X
Biomaterials
2019 Oct

Mo TTDai HDu HZhang RYChai KPAn YChen JJWang JKChen ZJChen CZJiang XJTang RWang LPTan QTang PMiao XYMeng PZhang LBCheng SQPeng BTu BJHan TLXia YYBaker PN
Environ Toxicol
2019 Feb

Chen JJSong HCao WCWang YRWang JG
Huan Jing Ke Xue
2018 Aug 08

Guo MChandris PGiannini JPTrexler AJFischer RChen JVishwasrao HDRey-Suarez IWu YWu XWaterman CMPatterson GHUpadhyaya ATaraska JWShroff H
Nat Methods
2018 Jun


Zhu GLynn GMJacobson OChen KLiu YZhang HMa YZhang FTian RNi QCheng SWang ZLu NYung BCWang ZLang LFu XJin AWeiss IDVishwasrao HNiu GShroff HKlinman DMSeder RAChen X
Nat Commun
2017 Dec 05

Zhu GMei LVishwasrao HDJacobson OWang ZLiu YYung BCFu XJin ANiu GWang QZhang FShroff HChen X
Nat Commun
2017 Nov 14

Wu YKumar ASmith CArdiel EChandris PChristensen RRey-Suarez IGuo MVishwasrao HDChen JTang JUpadhyaya ALa Riviere PJShroff H
Nat Commun
2017 Nov 13

Qian ZZhurkin VBAdhya S
Proc Natl Acad Sci U S A
2017 Nov 14

Kieffer-Kwon KRNimura KRao SSPXu JJung SPekowska ADose MStevens EMathe EDong PHuang SCRicci MABaranello LZheng YTomassoni Ardori FResch WStavreva DNelson SMcAndrew MCasellas AFinn EGregory CSt Hilaire BGJohnson SMDubois WCosma MPBatchelor ELevens DPhair RDMisteli TTessarollo LHager GLakadamyali MLiu ZFloer MShroff HAiden ELCasellas R
Mol Cell
2017 Aug 17

Normanno DBoudarène LDugast-Darzacq CChen JRichter CProux FBénichou OVoituriez RDarzacq XDahan M
Nat Commun
2015 Jul 07

Grimm JBEnglish BPChen JSlaughter JPZhang ZRevyakin APatel RMacklin JJNormanno DSinger RHLionnet TLavis LD
Nat Methods
2015 Mar

Hajj BWisniewski JEl Beheiry MChen JRevyakin AWu CDahan M
Proc Natl Acad Sci U S A
2014 Dec 09


Chen JZhang ZLi LChen BCRevyakin AHajj BLegant WDahan MLionnet TBetzig ETjian RLiu Z
Cell
2014 Mar 13